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dirac80
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Joined: 01 Feb 2010
Posts: 8
Institute, Location: Università cattolica del Sacro Cuore di Roma
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 Posted: 2010.03.04 13:34 Post subject: Dammif download |
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Hi all,
where do I upload dammif? What does dammif install? Thanks |
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Alex
Member
Joined: 09 Aug 2007
Posts: 48
Institute, Location: EMBL Hamburg
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| Posted: 2010.03.04 15:49 Post subject: |
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Hi
You can download dammif as part of Atsas package. It also provides documentation on how to use dammin, dammif, etc. This you can find in sasdoc or /doc folder of Atsas installation. The latter also has test examples.
Have fun!
Alex |
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dirac80
Member
Joined: 01 Feb 2010
Posts: 8
Institute, Location: Università cattolica del Sacro Cuore di Roma
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| Posted: 2010.03.09 16:39 Post subject: |
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Hi,
i have uploaded and installed Dammif. In your opinion, which program I should be used for ab initio modelling to lipoprotein, Dammin or Dammif? In particular, Can I use it? I have read that Dammif or Dammin is not applicable to heterogeneous systems like mixture or unfolded proteins. Is this the case (lipoprotein)? Thanks. |
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Alex
Member
Joined: 09 Aug 2007
Posts: 48
Institute, Location: EMBL Hamburg
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| Posted: 2010.03.09 17:16 Post subject: |
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Hi
Basically, Dammif and Dammin is the same program, the former is faster by a factor of ~40. In your case you should perhaps consider to use MONSA, which allows one to have phases with different contrasts.
You should also check that your data does not correspond to a mixture of
lipid and protein.
Cheers
Alex |
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