Search found 4 matches

by geoX
2016.06.05 12:50
Forum: Rigid Body Modelling
Topic: SASREF Distance constraint
Replies: 2
Views: 7651

SASREF Distance constraint

Hi I wanted to specify a distance constraint in SASREF covering a certain range. I found in a previous post that you can use "drng min_dist max_dist" to specifiy minimum and maximum distance restraints what would be exactly what I am looking for. Is there an "official" reference to this command some...
by geoX
2016.03.18 21:12
Forum: Ab Initio Shape Determination
Topic: Transformation matrix
Replies: 1
Views: 5723

Transformation matrix

Hi,

can somebody explain me the format of the transformation matrix that damsup applies? Is there a program with which I can apply the transformation matrix listed in the damsup output file on another .pdb file?
by geoX
2015.12.17 19:50
Forum: Ab Initio Shape Determination
Topic: Monsa model averaging procedure legitimate?
Replies: 0
Views: 9398

Monsa model averaging procedure legitimate?

Hello, do you think the following procedure to obtain an averaged Monsa model would be legitimate? - Combine phases of each run in respective PDB files and assign individual chain IDs to each phase -> Result: one .pdb file for each monsa run - Run damsel and damsup to align phases combined in one fi...
by geoX
2015.12.09 17:58
Forum: Ab Initio Shape Determination
Topic: Script to align MONSA models
Replies: 0
Views: 8200

Script to align MONSA models

Hi, I tried to run the custom script published in the article "Resolving Individual Components in Protein–RNA Complexes Using Small-Angle X-ray Scattering Experiments" for alignment of MONSA generated models. However, I cannot get it running. I have the suspicion that some characters are converted n...