Search found 4 matches

by Nature1
2017.09.08 05:21
Forum: Mixtures and Flexible Systems
Topic: How to use sreflex with protein_DNA complex?
Replies: 2
Views: 1960

Re: How to use sreflex with protein_DNA complex?

Dear Sasha, Thank you so much for looking at my problem. I will follow your suggestion to remodel my complex. BTW, I would like to ask a question regarding about removing number points of your scattering curve to reconstruct the PDDF. What is the criteria to determine how many beginning and ending p...
by Nature1
2017.08.28 20:59
Forum: Mixtures and Flexible Systems
Topic: Which program should I use to model protein and DNA complex
Replies: 2
Views: 2162

Re: Which program should I use to model protein and DNA comp

Thank you so much for you suggestion. I will try and let you know my update.
by Nature1
2017.08.15 21:22
Forum: Mixtures and Flexible Systems
Topic: How to use sreflex with protein_DNA complex?
Replies: 2
Views: 1960

How to use sreflex with protein_DNA complex?

Hi Saxier, I have questions regarding about running sreflex with protein_DNA complex. My protein is dimer that binds to palindrome DNA. When I ran the sreflex with protein_DNA complex.pdb then the protein lost its symmetrical binding to DNA. However, when I ran sreflex with protein.pdb and DNA.pdb, ...
by Nature1
2017.08.15 17:13
Forum: Mixtures and Flexible Systems
Topic: Which program should I use to model protein and DNA complex
Replies: 2
Views: 2162

Which program should I use to model protein and DNA complex

Dear Saxiers, I am new bee in modeling/creating envelops for my protein/DNA complex. Here are list of the data that I have: 1. SAXS profile of protein and DNA complex 2. SAXS profile of DNA itself : the envelop of the DNA fits well with the simulated DNA helix 3. SAXS profile of Protein itself: the ...