Ab initio shape determination

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Ask about DAMMIF, DAMMIN, GASBOR, MONSA

Last post by AL « 2008.10.18 16:48
Replies: 1
by AL » 2007.08.20 12:11

1 Replies

15161 Views

Last post by AL
2008.10.18 16:48
Protocol for obtaining the ab initio model

Last post by Guðmundsdóttir « 2023.12.05 10:30
Replies: 1
by nanolife » 2023.11.30 16:07

1 Replies

15 Views

Last post by Guðmundsdóttir
2023.12.05 10:30
problem running with Dammin in linux

Last post by AL « 2023.12.04 09:39
Replies: 6
by nanolife » 2023.11.28 15:28

6 Replies

76 Views

Last post by AL
2023.12.04 09:39
GASBORMX online: where are the volume fractions?

Last post by AL « 2023.06.07 18:22
Replies: 4
by Guðmundsdóttir » 2021.02.18 16:05

4 Replies

2921 Views

Last post by AL
2023.06.07 18:22
DAMMIN_error_starting_guess_PDB

Last post by 13vide « 2022.11.23 10:25
Replies: 3
by dirac80 » 2011.11.14 18:57

3 Replies

12475 Views

Last post by 13vide
2022.11.23 10:25
DAMMIN using Symmetry D2

Last post by AL « 2022.11.08 10:56
Replies: 7
by EduardoBruch » 2020.01.22 22:01

7 Replies

4190 Views

Last post by AL
2022.11.08 10:56
DAMMIN start file

Last post by AL « 2022.07.15 15:38
Replies: 3
by jbhopkins » 2022.07.08 21:40

3 Replies

1172 Views

Last post by AL
2022.07.15 15:38
Dammin Dammif Dammaver CIF to PDB

Last post by franke « 2022.06.20 13:49
Replies: 3
by jmarie » 2022.06.16 08:40

3 Replies

998 Views

Last post by franke
2022.06.20 13:49
Fit files for DAMMAVER.pdb

Last post by Heidos95 « 2022.05.12 07:53
Replies: 2
by Heidos95 » 2022.05.08 10:53

2 Replies

795 Views

Last post by Heidos95
2022.05.12 07:53
Overlay ab initio with crystal structure

Last post by biosaxs.com « 2022.02.15 17:45
Replies: 6
by han yin » 2020.03.03 17:12

6 Replies

5799 Views

Last post by biosaxs.com
2022.02.15 17:45
Ab initio model for big proteins

Last post by AL « 2022.02.15 17:31
Replies: 3
by MajoGB » 2021.01.31 21:15

3 Replies

2980 Views

Last post by AL
2022.02.15 17:31
Mult and Const parameters in MONSA

Last post by SaxsMax « 2021.10.04 10:33
Replies: 1
by mj » 2021.09.15 17:07

1 Replies

3104 Views

Last post by SaxsMax
2021.10.04 10:33
High NSD? 0 Clusters?

Last post by biosaxs.com « 2021.10.01 17:29
Replies: 1
by cnoell1 » 2021.07.01 17:04

1 Replies

2294 Views

Last post by biosaxs.com
2021.10.01 17:29
Is it possible to generate ab initio model for a section of the protein fibril?

Last post by han yin « 2021.08.05 11:28
Replies: 2
by han yin » 2021.04.01 15:44

2 Replies

1957 Views

Last post by han yin
2021.08.05 11:28
Modeling Non-Interacting Species with MONSA?

Last post by AL « 2021.08.04 21:34
Replies: 1
by rrod9595 » 2021.07.07 03:23

1 Replies

1590 Views

Last post by AL
2021.08.04 21:34
Gasbor for complex with P3/P2 symmetry

Last post by agolzar1984 « 2021.01.12 07:46

by agolzar1984 » 2021.01.12 07:46

0 Replies

3741 Views

Last post by agolzar1984
2021.01.12 07:46
AMBIMETER Missing Database... DATCLASS Shape Classifier Initialization Failure

Last post by AL « 2020.11.23 20:28
Replies: 1
by 480E » 2020.11.22 21:04

1 Replies

2278 Views

Last post by AL
2020.11.23 20:28
Help with GNOM/Gasbor

Last post by AL « 2020.03.09 10:33
Replies: 8
by oavina24 » 2018.08.02 23:00

8 Replies

12062 Views

Last post by AL
2020.03.09 10:33
Chi-Squared Values

Last post by SaxsMax « 2020.03.05 14:57
Replies: 14
by sazhns » 2016.02.16 03:26

14 Replies

17183 Views

Last post by SaxsMax
2020.03.05 14:57
Refinement with DAMMIN

Last post by cjuark « 2020.02.13 19:28
Replies: 4
by prithaghosh » 2019.12.04 14:48

4 Replies

4393 Views

Last post by cjuark
2020.02.13 19:28
using DAMMIF via ATSAS online

Last post by cjuark « 2020.02.12 05:45

by cjuark » 2020.02.12 05:45

0 Replies

4976 Views

Last post by cjuark
2020.02.12 05:45
Error running dammif with 'small' data

Last post by franke « 2020.01.27 22:28
Replies: 1
by jbhopkins » 2020.01.08 18:38

1 Replies

3025 Views

Last post by franke
2020.01.27 22:28
error trying to run dammif

Last post by AL « 2019.12.16 15:21
Replies: 1
by yuliashm » 2019.12.10 14:52

1 Replies

2926 Views

Last post by AL
2019.12.16 15:21
DAMMIN Web inferface

Last post by AL « 2019.07.31 10:19
Replies: 1
by dapereir » 2019.07.30 15:45

1 Replies

11521 Views

Last post by AL
2019.07.31 10:19
Problem running DAMMIN on GNOM output files

Last post by AL « 2019.07.30 14:00
Replies: 1
by ch1mjd » 2019.07.25 10:08

1 Replies

6814 Views

Last post by AL
2019.07.30 14:00
DAMMIF/DAMMIN models, 2 different line setups

Last post by snt « 2018.08.09 20:54

by snt » 2018.08.09 20:54

0 Replies

14598 Views

Last post by snt
2018.08.09 20:54
Dammif .log probability

Last post by oavina24 « 2018.08.04 02:13

by oavina24 » 2018.08.04 02:13

0 Replies

14597 Views

Last post by oavina24
2018.08.04 02:13
Chi-square values < 1

Last post by AL « 2018.08.03 12:51
Replies: 3
by BC_Flügge » 2018.06.15 10:16

3 Replies

8786 Views

Last post by AL
2018.08.03 12:51
Primus qt Dammif

Last post by AL « 2018.07.23 16:02
Replies: 2
by oavina24 » 2018.07.07 06:24

2 Replies

8031 Views

Last post by AL
2018.07.23 16:02
Heterodimer 3D structure fitting on ab initio model

Last post by AL « 2018.05.02 16:12
Replies: 1
by cabot » 2018.04.30 19:07

1 Replies

8473 Views

Last post by AL
2018.05.02 16:12
how to write the answer file for expert mode of dammin?

Last post by change « 2018.04.27 03:40
Replies: 2
by change » 2018.04.25 18:01

2 Replies

7707 Views

Last post by change
2018.04.27 03:40
question regarding GASBOR - model seems to be inside out

Last post by jimmyg « 2018.04.10 23:44
Replies: 2
by jimmyg » 2018.04.05 09:06

2 Replies

7548 Views

Last post by jimmyg
2018.04.10 23:44
Negative χ2 value for ab initio modeling

Last post by AL « 2018.03.21 14:13
Replies: 1
by agolzar1984 » 2018.03.20 05:15

1 Replies

6894 Views

Last post by AL
2018.03.21 14:13
MONSA_running protocol

Last post by nassos « 2018.02.19 16:44
Replies: 1
by susana » 2017.02.09 17:24

1 Replies

7682 Views

Last post by nassos
2018.02.19 16:44
SASRES on prealigned Models? Turn off alignment?

Last post by mawhite « 2018.01.11 21:01

by mawhite » 2018.01.11 21:01

0 Replies

13228 Views

Last post by mawhite
2018.01.11 21:01
DAMMIN data input not matching GNOM

Last post by AL « 2017.12.05 16:49
Replies: 1
by kjwinchell » 2017.11.22 01:26

1 Replies

7254 Views

Last post by AL
2017.12.05 16:49
Is there any advantage in considering more images? Where?

Last post by Albert « 2017.11.30 01:07

by Albert » 2017.11.30 01:07

0 Replies

13572 Views

Last post by Albert
2017.11.30 01:07
DAMMIF defaults to prolate aniso, even when entering unk

Last post by Jahabla « 2017.11.08 23:53
Replies: 4
by sjc » 2017.08.08 22:24

4 Replies

9996 Views

Last post by Jahabla
2017.11.08 23:53
DAMMIF/DAMAVER envelope cannot be displayed as surface

Last post by SC « 2017.10.27 05:20
Replies: 2
by SC » 2017.10.06 08:24

2 Replies

8307 Views

Last post by SC
2017.10.27 05:20
DAMMIF in 2.8.2 generates very different models than 2.8.0

Last post by sjc « 2017.08.17 17:44

by sjc » 2017.08.17 17:44

0 Replies

13058 Views

Last post by sjc
2017.08.17 17:44
Question regarding about Dammif

Last post by AL « 2017.07.12 16:51
Replies: 1
by nature » 2017.07.01 06:53

1 Replies

7550 Views

Last post by AL
2017.07.12 16:51
Crysol results and the shape from Dammin?

Last post by change « 2017.05.23 04:13
Replies: 1
by change » 2017.05.17 13:46

1 Replies

7643 Views

Last post by change
2017.05.23 04:13
Ab initio modelling for elongated coiled coil proteins

Last post by AL « 2017.05.08 15:53
Replies: 3
by Orlad » 2017.04.19 15:55

3 Replies

8950 Views

Last post by AL
2017.05.08 15:53
Theoretical scattering curves for MONSA

Last post by susana « 2017.01.24 15:36
Replies: 4
by susana » 2017.01.20 19:31

4 Replies

9517 Views

Last post by susana
2017.01.24 15:36
DAMMIF gives not expected results on simulated SAXS data.

Last post by MauiMarie « 2017.01.10 18:34
Replies: 2
by MauiMarie » 2017.01.10 17:17

2 Replies

9129 Views

Last post by MauiMarie
2017.01.10 18:34
Strange outputs from MONSA

Last post by SaxsMax « 2016.11.24 12:36
Replies: 2
by mchammer » 2016.11.20 16:05

2 Replies

8671 Views

Last post by SaxsMax
2016.11.24 12:36
multiple runs DAMMIN batch mode

Last post by eleni-i « 2016.10.12 15:55
Replies: 3
by eleni-i » 2016.09.20 16:59

3 Replies

9940 Views

Last post by eleni-i
2016.10.12 15:55
How DAMMIF consider water shell?

Last post by Alexandros « 2016.09.26 14:45
Replies: 2
by dzabelskii » 2016.09.09 12:01

2 Replies

8814 Views

Last post by Alexandros
2016.09.26 14:45
DAMMIF results in a strange damfilt model

Last post by Phil_GG « 2016.09.23 07:06
Replies: 2
by Phil_GG » 2016.09.20 07:04

2 Replies

8339 Views

Last post by Phil_GG
2016.09.23 07:06
MONSA input parameters

Last post by emded « 2016.08.30 00:20

by emded » 2016.08.30 00:20

0 Replies

8494 Views

Last post by emded
2016.08.30 00:20

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