Ab initio shape determination

New Topic

345 topics

Page 1 of 7
- Jump to page:
1
2
3
4
5
…
7
Next

Topics

Replies

Views

Last post

Ask about DAMMIF, DAMMIN, GASBOR, MONSA

Last post by AL « 2008.10.18 16:48
Replies: 1
by AL » 2007.08.20 12:11

1 Replies

14994 Views

Last post by AL
2008.10.18 16:48
GASBORMX online: where are the volume fractions?

Last post by AL « 2023.06.07 18:22
Replies: 4
by Guðmundsdóttir » 2021.02.18 16:05

4 Replies

2206 Views

Last post by AL
2023.06.07 18:22
DAMMIN_error_starting_guess_PDB

Last post by 13vide « 2022.11.23 10:25
Replies: 3
by dirac80 » 2011.11.14 18:57

3 Replies

12299 Views

Last post by 13vide
2022.11.23 10:25
DAMMIN using Symmetry D2

Last post by AL « 2022.11.08 10:56
Replies: 7
by EduardoBruch » 2020.01.22 22:01

7 Replies

4007 Views

Last post by AL
2022.11.08 10:56
DAMMIN start file

Last post by AL « 2022.07.15 15:38
Replies: 3
by jbhopkins » 2022.07.08 21:40

3 Replies

1039 Views

Last post by AL
2022.07.15 15:38
Dammin Dammif Dammaver CIF to PDB

Last post by franke « 2022.06.20 13:49
Replies: 3
by jmarie » 2022.06.16 08:40

3 Replies

812 Views

Last post by franke
2022.06.20 13:49
Fit files for DAMMAVER.pdb

Last post by Heidos95 « 2022.05.12 07:53
Replies: 2
by Heidos95 » 2022.05.08 10:53

2 Replies

666 Views

Last post by Heidos95
2022.05.12 07:53
Overlay ab initio with crystal structure

Last post by biosaxs.com « 2022.02.15 17:45
Replies: 6
by han yin » 2020.03.03 17:12

6 Replies

5568 Views

Last post by biosaxs.com
2022.02.15 17:45
Ab initio model for big proteins

Last post by AL « 2022.02.15 17:31
Replies: 3
by MajoGB » 2021.01.31 21:15

3 Replies

2853 Views

Last post by AL
2022.02.15 17:31
Mult and Const parameters in MONSA

Last post by SaxsMax « 2021.10.04 10:33
Replies: 1
by mj » 2021.09.15 17:07

1 Replies

2961 Views

Last post by SaxsMax
2021.10.04 10:33
High NSD? 0 Clusters?

Last post by biosaxs.com « 2021.10.01 17:29
Replies: 1
by cnoell1 » 2021.07.01 17:04

1 Replies

2175 Views

Last post by biosaxs.com
2021.10.01 17:29
Is it possible to generate ab initio model for a section of the protein fibril?

Last post by han yin « 2021.08.05 11:28
Replies: 2
by han yin » 2021.04.01 15:44

2 Replies

1789 Views

Last post by han yin
2021.08.05 11:28
Modeling Non-Interacting Species with MONSA?

Last post by AL « 2021.08.04 21:34
Replies: 1
by rrod9595 » 2021.07.07 03:23

1 Replies

1449 Views

Last post by AL
2021.08.04 21:34
Gasbor for complex with P3/P2 symmetry

Last post by agolzar1984 « 2021.01.12 07:46

by agolzar1984 » 2021.01.12 07:46

0 Replies

3452 Views

Last post by agolzar1984
2021.01.12 07:46
AMBIMETER Missing Database... DATCLASS Shape Classifier Initialization Failure

Last post by AL « 2020.11.23 20:28
Replies: 1
by 480E » 2020.11.22 21:04

1 Replies

2155 Views

Last post by AL
2020.11.23 20:28
Help with GNOM/Gasbor

Last post by AL « 2020.03.09 10:33
Replies: 8
by oavina24 » 2018.08.02 23:00

8 Replies

11832 Views

Last post by AL
2020.03.09 10:33
Chi-Squared Values

Last post by SaxsMax « 2020.03.05 14:57
Replies: 14
by sazhns » 2016.02.16 03:26

14 Replies

16829 Views

Last post by SaxsMax
2020.03.05 14:57
Refinement with DAMMIN

Last post by cjuark « 2020.02.13 19:28
Replies: 4
by prithaghosh » 2019.12.04 14:48

4 Replies

4239 Views

Last post by cjuark
2020.02.13 19:28
using DAMMIF via ATSAS online

Last post by cjuark « 2020.02.12 05:45

by cjuark » 2020.02.12 05:45

0 Replies

4722 Views

Last post by cjuark
2020.02.12 05:45
Error running dammif with 'small' data

Last post by franke « 2020.01.27 22:28
Replies: 1
by jbhopkins » 2020.01.08 18:38

1 Replies

2889 Views

Last post by franke
2020.01.27 22:28
error trying to run dammif

Last post by AL « 2019.12.16 15:21
Replies: 1
by yuliashm » 2019.12.10 14:52

1 Replies

2784 Views

Last post by AL
2019.12.16 15:21
DAMMIN Web inferface

Last post by AL « 2019.07.31 10:19
Replies: 1
by dapereir » 2019.07.30 15:45

1 Replies

11363 Views

Last post by AL
2019.07.31 10:19
Problem running DAMMIN on GNOM output files

Last post by AL « 2019.07.30 14:00
Replies: 1
by ch1mjd » 2019.07.25 10:08

1 Replies

6671 Views

Last post by AL
2019.07.30 14:00
DAMMIF/DAMMIN models, 2 different line setups

Last post by snt « 2018.08.09 20:54

by snt » 2018.08.09 20:54

0 Replies

14456 Views

Last post by snt
2018.08.09 20:54
Dammif .log probability

Last post by oavina24 « 2018.08.04 02:13

by oavina24 » 2018.08.04 02:13

0 Replies

14425 Views

Last post by oavina24
2018.08.04 02:13
Chi-square values < 1

Last post by AL « 2018.08.03 12:51
Replies: 3
by BC_Flügge » 2018.06.15 10:16

3 Replies

8603 Views

Last post by AL
2018.08.03 12:51
Primus qt Dammif

Last post by AL « 2018.07.23 16:02
Replies: 2
by oavina24 » 2018.07.07 06:24

2 Replies

7884 Views

Last post by AL
2018.07.23 16:02
Heterodimer 3D structure fitting on ab initio model

Last post by AL « 2018.05.02 16:12
Replies: 1
by cabot » 2018.04.30 19:07

1 Replies

8139 Views

Last post by AL
2018.05.02 16:12
how to write the answer file for expert mode of dammin?

Last post by change « 2018.04.27 03:40
Replies: 2
by change » 2018.04.25 18:01

2 Replies

7569 Views

Last post by change
2018.04.27 03:40
question regarding GASBOR - model seems to be inside out

Last post by jimmyg « 2018.04.10 23:44
Replies: 2
by jimmyg » 2018.04.05 09:06

2 Replies

7394 Views

Last post by jimmyg
2018.04.10 23:44
Negative χ2 value for ab initio modeling

Last post by AL « 2018.03.21 14:13
Replies: 1
by agolzar1984 » 2018.03.20 05:15

1 Replies

6752 Views

Last post by AL
2018.03.21 14:13
MONSA_running protocol

Last post by nassos « 2018.02.19 16:44
Replies: 1
by susana » 2017.02.09 17:24

1 Replies

7556 Views

Last post by nassos
2018.02.19 16:44
SASRES on prealigned Models? Turn off alignment?

Last post by mawhite « 2018.01.11 21:01

by mawhite » 2018.01.11 21:01

0 Replies

13076 Views

Last post by mawhite
2018.01.11 21:01
DAMMIN data input not matching GNOM

Last post by AL « 2017.12.05 16:49
Replies: 1
by kjwinchell » 2017.11.22 01:26

1 Replies

7119 Views

Last post by AL
2017.12.05 16:49
Is there any advantage in considering more images? Where?

Last post by Albert « 2017.11.30 01:07

by Albert » 2017.11.30 01:07

0 Replies

13433 Views

Last post by Albert
2017.11.30 01:07
DAMMIF defaults to prolate aniso, even when entering unk

Last post by Jahabla « 2017.11.08 23:53
Replies: 4
by sjc » 2017.08.08 22:24

4 Replies

9854 Views

Last post by Jahabla
2017.11.08 23:53
DAMMIF/DAMAVER envelope cannot be displayed as surface

Last post by SC « 2017.10.27 05:20
Replies: 2
by SC » 2017.10.06 08:24

2 Replies

8172 Views

Last post by SC
2017.10.27 05:20
DAMMIF in 2.8.2 generates very different models than 2.8.0

Last post by sjc « 2017.08.17 17:44

by sjc » 2017.08.17 17:44

0 Replies

12924 Views

Last post by sjc
2017.08.17 17:44
Question regarding about Dammif

Last post by AL « 2017.07.12 16:51
Replies: 1
by nature » 2017.07.01 06:53

1 Replies

7421 Views

Last post by AL
2017.07.12 16:51
Crysol results and the shape from Dammin?

Last post by change « 2017.05.23 04:13
Replies: 1
by change » 2017.05.17 13:46

1 Replies

7509 Views

Last post by change
2017.05.23 04:13
Ab initio modelling for elongated coiled coil proteins

Last post by AL « 2017.05.08 15:53
Replies: 3
by Orlad » 2017.04.19 15:55

3 Replies

8800 Views

Last post by AL
2017.05.08 15:53
Theoretical scattering curves for MONSA

Last post by susana « 2017.01.24 15:36
Replies: 4
by susana » 2017.01.20 19:31

4 Replies

9368 Views

Last post by susana
2017.01.24 15:36
DAMMIF gives not expected results on simulated SAXS data.

Last post by MauiMarie « 2017.01.10 18:34
Replies: 2
by MauiMarie » 2017.01.10 17:17

2 Replies

9001 Views

Last post by MauiMarie
2017.01.10 18:34
Strange outputs from MONSA

Last post by SaxsMax « 2016.11.24 12:36
Replies: 2
by mchammer » 2016.11.20 16:05

2 Replies

8537 Views

Last post by SaxsMax
2016.11.24 12:36
multiple runs DAMMIN batch mode

Last post by eleni-i « 2016.10.12 15:55
Replies: 3
by eleni-i » 2016.09.20 16:59

3 Replies

9788 Views

Last post by eleni-i
2016.10.12 15:55
How DAMMIF consider water shell?

Last post by Alexandros « 2016.09.26 14:45
Replies: 2
by dzabelskii » 2016.09.09 12:01

2 Replies

8679 Views

Last post by Alexandros
2016.09.26 14:45
DAMMIF results in a strange damfilt model

Last post by Phil_GG « 2016.09.23 07:06
Replies: 2
by Phil_GG » 2016.09.20 07:04

2 Replies

8223 Views

Last post by Phil_GG
2016.09.23 07:06
MONSA input parameters

Last post by emded « 2016.08.30 00:20

by emded » 2016.08.30 00:20

0 Replies

8375 Views

Last post by emded
2016.08.30 00:20
high chi/square values

Last post by AL « 2016.08.04 21:02
Replies: 1
by Beatrasbe » 2016.07.19 11:51

1 Replies

7792 Views

Last post by AL
2016.08.04 21:02
Gasbor and membrane protein

Last post by Bastien « 2016.07.15 15:56

by Bastien » 2016.07.15 15:56

0 Replies

8130 Views

Last post by Bastien
2016.07.15 15:56

New Topic

345 topics

Page 1 of 7
- Jump to page:
1
2
3
4
5
…
7
Next

Return to Board Index

Forum permissions

You cannot post new topics in this forum
You cannot reply to topics in this forum
You cannot edit your posts in this forum
You cannot delete your posts in this forum
You cannot post attachments in this forum