Ab initio shape determination

New Topic

345 topics

Page 1 of 7
- Jump to page:
1
2
3
4
5
…
7
Next

Topics

Replies

Views

Last post

Ask about DAMMIF, DAMMIN, GASBOR, MONSA

Last post by AL « 2008.10.18 16:48
Replies: 1
by AL » 2007.08.20 12:11

1 Replies

14864 Views

Last post by AL
2008.10.18 16:48
DAMMIN_error_starting_guess_PDB

Last post by 13vide « 2022.11.23 10:25
Replies: 3
by dirac80 » 2011.11.14 18:57

3 Replies

12108 Views

Last post by 13vide
2022.11.23 10:25
DAMMIN using Symmetry D2

Last post by AL « 2022.11.08 10:56
Replies: 7
by EduardoBruch » 2020.01.22 22:01

7 Replies

3722 Views

Last post by AL
2022.11.08 10:56
DAMMIN start file

Last post by AL « 2022.07.15 15:38
Replies: 3
by jbhopkins » 2022.07.08 21:40

3 Replies

857 Views

Last post by AL
2022.07.15 15:38
Dammin Dammif Dammaver CIF to PDB

Last post by franke « 2022.06.20 13:49
Replies: 3
by jmarie » 2022.06.16 08:40

3 Replies

647 Views

Last post by franke
2022.06.20 13:49
Fit files for DAMMAVER.pdb

Last post by Heidos95 « 2022.05.12 07:53
Replies: 2
by Heidos95 » 2022.05.08 10:53

2 Replies

565 Views

Last post by Heidos95
2022.05.12 07:53
Overlay ab initio with crystal structure

Last post by biosaxs.com « 2022.02.15 17:45
Replies: 6
by han yin » 2020.03.03 17:12

6 Replies

5354 Views

Last post by biosaxs.com
2022.02.15 17:45
Ab initio model for big proteins

Last post by AL « 2022.02.15 17:31
Replies: 3
by MajoGB » 2021.01.31 21:15

3 Replies

2695 Views

Last post by AL
2022.02.15 17:31
Mult and Const parameters in MONSA

Last post by SaxsMax « 2021.10.04 10:33
Replies: 1
by mj » 2021.09.15 17:07

1 Replies

2841 Views

Last post by SaxsMax
2021.10.04 10:33
High NSD? 0 Clusters?

Last post by biosaxs.com « 2021.10.01 17:29
Replies: 1
by cnoell1 » 2021.07.01 17:04

1 Replies

2047 Views

Last post by biosaxs.com
2021.10.01 17:29
Is it possible to generate ab initio model for a section of the protein fibril?

Last post by han yin « 2021.08.05 11:28
Replies: 2
by han yin » 2021.04.01 15:44

2 Replies

1663 Views

Last post by han yin
2021.08.05 11:28
Modeling Non-Interacting Species with MONSA?

Last post by AL « 2021.08.04 21:34
Replies: 1
by rrod9595 » 2021.07.07 03:23

1 Replies

1329 Views

Last post by AL
2021.08.04 21:34
GASBORMX online: where are the volume fractions?

Last post by AL « 2021.03.05 19:42
Replies: 1
by Guðmundsdóttir » 2021.02.18 16:05

1 Replies

1900 Views

Last post by AL
2021.03.05 19:42
Gasbor for complex with P3/P2 symmetry

Last post by agolzar1984 « 2021.01.12 07:46

by agolzar1984 » 2021.01.12 07:46

0 Replies

3277 Views

Last post by agolzar1984
2021.01.12 07:46
AMBIMETER Missing Database... DATCLASS Shape Classifier Initialization Failure

Last post by AL « 2020.11.23 20:28
Replies: 1
by 480E » 2020.11.22 21:04

1 Replies

2023 Views

Last post by AL
2020.11.23 20:28
Help with GNOM/Gasbor

Last post by AL « 2020.03.09 10:33
Replies: 8
by oavina24 » 2018.08.02 23:00

8 Replies

11548 Views

Last post by AL
2020.03.09 10:33
Chi-Squared Values

Last post by SaxsMax « 2020.03.05 14:57
Replies: 14
by sazhns » 2016.02.16 03:26

14 Replies

16312 Views

Last post by SaxsMax
2020.03.05 14:57
Refinement with DAMMIN

Last post by cjuark « 2020.02.13 19:28
Replies: 4
by prithaghosh » 2019.12.04 14:48

4 Replies

4076 Views

Last post by cjuark
2020.02.13 19:28
using DAMMIF via ATSAS online

Last post by cjuark « 2020.02.12 05:45

by cjuark » 2020.02.12 05:45

0 Replies

4538 Views

Last post by cjuark
2020.02.12 05:45
Error running dammif with 'small' data

Last post by franke « 2020.01.27 22:28
Replies: 1
by jbhopkins » 2020.01.08 18:38

1 Replies

2730 Views

Last post by franke
2020.01.27 22:28
error trying to run dammif

Last post by AL « 2019.12.16 15:21
Replies: 1
by yuliashm » 2019.12.10 14:52

1 Replies

2658 Views

Last post by AL
2019.12.16 15:21
DAMMIN Web inferface

Last post by AL « 2019.07.31 10:19
Replies: 1
by dapereir » 2019.07.30 15:45

1 Replies

11245 Views

Last post by AL
2019.07.31 10:19
Problem running DAMMIN on GNOM output files

Last post by AL « 2019.07.30 14:00
Replies: 1
by ch1mjd » 2019.07.25 10:08

1 Replies

6549 Views

Last post by AL
2019.07.30 14:00
DAMMIF/DAMMIN models, 2 different line setups

Last post by snt « 2018.08.09 20:54

by snt » 2018.08.09 20:54

0 Replies

14287 Views

Last post by snt
2018.08.09 20:54
Dammif .log probability

Last post by oavina24 « 2018.08.04 02:13

by oavina24 » 2018.08.04 02:13

0 Replies

14287 Views

Last post by oavina24
2018.08.04 02:13
Chi-square values < 1

Last post by AL « 2018.08.03 12:51
Replies: 3
by BC_Flügge » 2018.06.15 10:16

3 Replies

8392 Views

Last post by AL
2018.08.03 12:51
Primus qt Dammif

Last post by AL « 2018.07.23 16:02
Replies: 2
by oavina24 » 2018.07.07 06:24

2 Replies

7734 Views

Last post by AL
2018.07.23 16:02
Heterodimer 3D structure fitting on ab initio model

Last post by AL « 2018.05.02 16:12
Replies: 1
by cabot » 2018.04.30 19:07

1 Replies

7601 Views

Last post by AL
2018.05.02 16:12
how to write the answer file for expert mode of dammin?

Last post by change « 2018.04.27 03:40
Replies: 2
by change » 2018.04.25 18:01

2 Replies

7412 Views

Last post by change
2018.04.27 03:40
question regarding GASBOR - model seems to be inside out

Last post by jimmyg « 2018.04.10 23:44
Replies: 2
by jimmyg » 2018.04.05 09:06

2 Replies

7252 Views

Last post by jimmyg
2018.04.10 23:44
Negative χ2 value for ab initio modeling

Last post by AL « 2018.03.21 14:13
Replies: 1
by agolzar1984 » 2018.03.20 05:15

1 Replies

6634 Views

Last post by AL
2018.03.21 14:13
MONSA_running protocol

Last post by nassos « 2018.02.19 16:44
Replies: 1
by susana » 2017.02.09 17:24

1 Replies

7436 Views

Last post by nassos
2018.02.19 16:44
SASRES on prealigned Models? Turn off alignment?

Last post by mawhite « 2018.01.11 21:01

by mawhite » 2018.01.11 21:01

0 Replies

12943 Views

Last post by mawhite
2018.01.11 21:01
DAMMIN data input not matching GNOM

Last post by AL « 2017.12.05 16:49
Replies: 1
by kjwinchell » 2017.11.22 01:26

1 Replies

6994 Views

Last post by AL
2017.12.05 16:49
Is there any advantage in considering more images? Where?

Last post by Albert « 2017.11.30 01:07

by Albert » 2017.11.30 01:07

0 Replies

13297 Views

Last post by Albert
2017.11.30 01:07
DAMMIF defaults to prolate aniso, even when entering unk

Last post by Jahabla « 2017.11.08 23:53
Replies: 4
by sjc » 2017.08.08 22:24

4 Replies

9639 Views

Last post by Jahabla
2017.11.08 23:53
DAMMIF/DAMAVER envelope cannot be displayed as surface

Last post by SC « 2017.10.27 05:20
Replies: 2
by SC » 2017.10.06 08:24

2 Replies

8026 Views

Last post by SC
2017.10.27 05:20
DAMMIF in 2.8.2 generates very different models than 2.8.0

Last post by sjc « 2017.08.17 17:44

by sjc » 2017.08.17 17:44

0 Replies

12806 Views

Last post by sjc
2017.08.17 17:44
Question regarding about Dammif

Last post by AL « 2017.07.12 16:51
Replies: 1
by nature » 2017.07.01 06:53

1 Replies

7288 Views

Last post by AL
2017.07.12 16:51
Crysol results and the shape from Dammin?

Last post by change « 2017.05.23 04:13
Replies: 1
by change » 2017.05.17 13:46

1 Replies

7396 Views

Last post by change
2017.05.23 04:13
Ab initio modelling for elongated coiled coil proteins

Last post by AL « 2017.05.08 15:53
Replies: 3
by Orlad » 2017.04.19 15:55

3 Replies

8629 Views

Last post by AL
2017.05.08 15:53
Theoretical scattering curves for MONSA

Last post by susana « 2017.01.24 15:36
Replies: 4
by susana » 2017.01.20 19:31

4 Replies

9205 Views

Last post by susana
2017.01.24 15:36
DAMMIF gives not expected results on simulated SAXS data.

Last post by MauiMarie « 2017.01.10 18:34
Replies: 2
by MauiMarie » 2017.01.10 17:17

2 Replies

8855 Views

Last post by MauiMarie
2017.01.10 18:34
Strange outputs from MONSA

Last post by SaxsMax « 2016.11.24 12:36
Replies: 2
by mchammer » 2016.11.20 16:05

2 Replies

8380 Views

Last post by SaxsMax
2016.11.24 12:36
multiple runs DAMMIN batch mode

Last post by eleni-i « 2016.10.12 15:55
Replies: 3
by eleni-i » 2016.09.20 16:59

3 Replies

9652 Views

Last post by eleni-i
2016.10.12 15:55
How DAMMIF consider water shell?

Last post by Alexandros « 2016.09.26 14:45
Replies: 2
by dzabelskii » 2016.09.09 12:01

2 Replies

8549 Views

Last post by Alexandros
2016.09.26 14:45
DAMMIF results in a strange damfilt model

Last post by Phil_GG « 2016.09.23 07:06
Replies: 2
by Phil_GG » 2016.09.20 07:04

2 Replies

8095 Views

Last post by Phil_GG
2016.09.23 07:06
MONSA input parameters

Last post by emded « 2016.08.30 00:20

by emded » 2016.08.30 00:20

0 Replies

8267 Views

Last post by emded
2016.08.30 00:20
high chi/square values

Last post by AL « 2016.08.04 21:02
Replies: 1
by Beatrasbe » 2016.07.19 11:51

1 Replies

7688 Views

Last post by AL
2016.08.04 21:02
Gasbor and membrane protein

Last post by Bastien « 2016.07.15 15:56

by Bastien » 2016.07.15 15:56

0 Replies

8028 Views

Last post by Bastien
2016.07.15 15:56

New Topic

345 topics

Page 1 of 7
- Jump to page:
1
2
3
4
5
…
7
Next

Return to Board Index

Forum permissions

You cannot post new topics in this forum
You cannot reply to topics in this forum
You cannot edit your posts in this forum
You cannot delete your posts in this forum
You cannot post attachments in this forum