GAJOE 2.1 Output Files

Linear (OLIGOMER), and non-linear (MIXTURE) analysis, singular value decomposition (SVDPLOT), addition of missing fragments (BUNCH, CORAL), analysis of flexible systems (EOM/RANCH & GAJOE), flexible refinement of high-resolution models (SREFLEX)
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GAJOE 2.1 Output Files

#1 Post by alava » 2015.04.21 00:05


I am using GAJOE 2.1 (from ATSAS 2.6.0) on an external pool. The manual on the embl-hamburg website is still for GAJOE 2.0, and 2.1 has new output files. Could anyone explain what the new output files are?

Thanks in advance,

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Re: GAJOE 2.1 Output Files

#2 Post by Hayds » 2015.08.05 04:14

Hi Abhi,

the output files include for example:

CaCa_distr_001_1.dat --> distribution of end to end distances
Size_distr_001_1.dat --> ensemble size (Dmax) distribution
pdbs --> conformations in the selected ensemble
statistics_flexibility.svg --> a vector graphic summarising the flexibility metrics (Rflex, Rsigma)
Rg_distr_001_1.dat --> ensemble size (Rg) distribution
logFile_001_1.log --> log file --> fit of the selected ensemble to the experimental data

Hope it helps,


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