EOM problem online

Linear (OLIGOMER), and non-linear (MIXTURE) analysis, singular value decomposition (SVDPLOT), addition of missing fragments (BUNCH, CORAL), analysis of flexible systems (EOM/RANCH & GAJOE), flexible refinement of high-resolution models (SREFLEX)
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lihuanhuan
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EOM problem online

#1 Post by lihuanhuan » 2016.12.03 14:55

hi,

i have a protein with 3 domains(N terminal--a domain--linker1--b domain--linker2--c domain--C terminal). The protein forms dimer in solution and should be flexible. I wish use EOM online to analysis the conformation changes, but i always get the errors like this:

Errors and/or warnings registered during execution:
error: the chains in the multichain PDB cannot be lined up. Please make sure that all the chains have the same number of atoms.
find: `./GA001/curve_1/Rg_*.dat': No such file or directory
find: `./GA001/curve_1/Size_*.dat': No such file or director

then, what should i do to handle this issue? anyone can help me ?

thanks.

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AL
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Re: EOM problem online

#2 Post by AL » 2016.12.14 14:48

lihuanhuan wrote:error: the chains in the multichain PDB cannot be lined up. Please make sure that all the chains have the same number of atoms.
...
then, what should i do to handle this issue?
Well, please make sure your dimer domain has exactly two chains of the same length.

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