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EOM modelling with DEER restraints

Posted: 2019.05.08 18:02
by almeida
Hello,

I am trying to model a monomer protein, from a SEC-SAXS dataset. The protein consists of two rigid bodies connected by a flexible linker. I also have interresidue distances data, obtained by double electron-electron resonance (DEER) spectroscopy. I want to use those distances as restraints for the modeling.

It is any way to define several distances between a pair of residues in the 'contacts' file, corresponding to different domains?

According to the third example for contacts definition in the EOM manual: "N.B. This does not define a set of contacts between domain/subunit 1 and domain/subunit 2. Non P1 symmetry must be defined."

Thanks in advance

Yasser