Hello
I have my damfilt.pdb file and I uploaded it to Pymol. How can I increase the diameter of the protein's spheres and buffers's spheres, in order to obtain a full clean surface of the envelope?
Thank you
Pymol illustration
Re: Pymol illustration
To modify the size of displayed spheres, you can use the 'set sphere_scale' in the pymol command line, for example:
show spheres
set sphere_scale, 1.5
set sphere_scale, 3.0
you can play around with the number until you get the desired results.
HTH,
sasha
show spheres
set sphere_scale, 1.5
set sphere_scale, 3.0
you can play around with the number until you get the desired results.
HTH,
sasha
Re: Pymol illustration
My previous post referred to changing the size of displayed spheres, but if you want to modify the surface representation, you should change the solvent_radius parameter:
set solvent_radius, 1.8
If the surface does not change correspondingly, use:
rebuild
A larger solvent_radius would show a smoother surface.
Check out more info at:
https://pymolwiki.org/index.php/Surface
Best,
sasha
set solvent_radius, 1.8
If the surface does not change correspondingly, use:
rebuild
A larger solvent_radius would show a smoother surface.
Check out more info at:
https://pymolwiki.org/index.php/Surface
Best,
sasha