generate the envelop of the protein

Calculation of SAXS and SANS profiles (CRYSOL, CRYSON), superposition of models (SUPCOMB, DAMAVER, DAMCLUST), database DARA
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zhuwenkai
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generate the envelop of the protein

#1 Post by zhuwenkai » 2016.09.27 19:42

Hi,
i know the DAMMIN gives the dummy atoms model when you do the ab inito modeling,
but i often see a different representation of the model, something like EM map.i don't know
how to generate the model, i found a photo ,can you help me to figure it out? thanks in advance.
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AL
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generate surface

#2 Post by AL » 2016.10.06 14:31

Check this post.
If you use PyMOL - try to set solvent_radius in surface representation (careful, it may crash if the radius is too large).

zhuwenkai
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Re: generate surface

#3 Post by zhuwenkai » 2016.10.06 17:16

AL wrote:Check this post.
If you use PyMOL - try to set solvent_radius in surface representation (careful, it may crash if the radius is too large).
Thanks a lot, i will read it carefully.

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AL
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DAMMIF models in Chimera

#4 Post by AL » 2016.10.07 09:46


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