Mac 10.12.2 crysol with "****"

Calculation of SAXS and SANS profiles (CRYSOL, CRYSON), superposition of models (SUPCOMB, DAMAVER, DAMCLUST), database DARA
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change
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Mac 10.12.2 crysol with "****"

#1 Post by change » 2017.01.10 13:58

hello,
Recently, on mac and centOS6.8 I did the crysol to compare my rosetta results(RNA pdb files) and my SAXS dat file, however the Chi^2 value did not appear and instead with "****"(either command line mode or interactive mode). But when I did the same analysis with windows on the interactively mode, the normal chi^2 value came out. What is wrong with my mac???


yikan

sasha
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Re: Mac 10.12.2 crysol with "****"

#2 Post by sasha » 2017.01.10 23:29

Dear Yikan,

The ******* is usually a chi-square value so large that overflows the output format.
What version(s) of ATSAS are you using? Please check using the command
> crysol -v

It would be great if you can provide the mentioned files (at least one .dat and one .pdb) so we can look deeper into the issue.

Best,

sasha

change
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Re: Mac 10.12.2 crysol with "****"

#3 Post by change » 2017.01.11 05:37

>crysol -v
>crysol, ATSAS 2.7.1 (r6670)
>Copyright (c) ATSAS Team, EMBL, Hamburg Outstation 1995-2015

my input files are as follows.
In the mac the Chi^2 is ****; while in my windows the Chi^2 is 4.816
Attachments
z3-d2-50.pdb
(176.16 KiB) Downloaded 201 times
SZ8_30_120916.dat
(3.8 KiB) Downloaded 223 times

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AL
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Re: Mac 10.12.2 crysol with "****"

#4 Post by AL » 2017.01.11 19:53

change wrote:>crysol -v
>crysol, ATSAS 2.7.1 (r6670)
>Copyright (c) ATSAS Team, EMBL, Hamburg Outstation 1995-2015
You may want to update ATSAS to 2.8.0.

change
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Re: Mac 10.12.2 crysol with "****"

#5 Post by change » 2017.01.12 06:21

Thank you! yes I update my ATSAS to 2.80, the installation file is so big about 1GB.
however I can get the correct Chi^2 instead of "****",when I lanuched my crysol.

btw, when i use the crysol in the interactive mode when it comes to plotting the fit, then a blank sasplot window appeared with no "RGT" or no "RGE" or no" the two curves" and anything else. I do not know Why???

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