CRYSOL:deal with the missing part in the pdb file?

Calculation of SAXS and SANS profiles (CRYSOL, CRYSON), superposition of models (SUPCOMB, DAMAVER, DAMCLUST), database DARA
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zhuwenkai
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Joined: 2016.09.27 19:06

CRYSOL:deal with the missing part in the pdb file?

#1 Post by zhuwenkai » 2017.03.08 11:28

Hi,the protein involved in my project is flexible, so a 6aa linker is missing in the high-resolution model.

I compare the experimental curve with the theoretical curve computed from the model by CRYSOL to

prove the conformation in solution is different.

However, i don't know whether the comparison is appropriate since the flexible linker is missing in the pdb file.

and how can i add the missing part to the structural model to make it complete?

Thank you!

Alex
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Re: CRYSOL:deal with the missing part in the pdb file?

#2 Post by Alex » 2017.03.08 14:50

and how can i add the missing part to the structural model to make it complete?
use BUNCH and/or CORAL.

zhuwenkai
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Posts: 14
Joined: 2016.09.27 19:06

Re: CRYSOL:deal with the missing part in the pdb file?

#3 Post by zhuwenkai » 2017.03.15 15:13

Alex wrote:
and how can i add the missing part to the structural model to make it complete?
use BUNCH and/or CORAL.
Thank you very much!

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