Questions about GNOM, GASBOR and DAMMIN.

Ab initio modelling: DAMMIF, DAMMIN, GASBOR, MONSA
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xinleisong
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Joined: 2014.04.20 10:15

Questions about GNOM, GASBOR and DAMMIN.

#1 Post by xinleisong » 2014.04.21 05:55

Here, I have a few questions about GNOM, GASBOR and DAMMIN. The software version is atsas-2.5.2-1.WinXP.x86 and
my computer is Windows 7,32 bit.
First, I use the GNOM module in PRIMUS to do the P(r) calculation. I want to use the GNOM module in ATSAS individually. But it always shows "invalid data parameter INPUT1". So I can only use PRIMUS to do the P(r) calculation. Can the output gnom.out file from PRIMUS be used for the next ab initio structure modeling by GASBOR or DAMMIN?
Second, what kind type of the output flie from PRIMUS? Is it ASCII file? I can't open it by double-click it, this is why?
Third, I can't run GASBOR and DAMMIN well. I have tried by using the gnom.out file from PRIMUS. But the programm can't go ahead after "Information read form the GNOM flie" and just request me to input the file name again and again. This is why?
Fourth, I tried to use the GASBOR and DAMMIN online. But I can't get any pdb file. I can only get a log file. Is this related to my gnom.out file?
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gnom.out
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SaxsMax
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Joined: 2007.08.03 19:16

Re: Questions about GNOM, GASBOR and DAMMIN.

#2 Post by SaxsMax » 2014.05.28 12:55

The Gnom file is incomplete. You need to run Gnom program
till the end so that the *.out file is properly written

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