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Pre-bunch Issue

Posted: 2019.11.15 00:53
by jaala
I'm trying to use pre-bunch with 3 domains and after I input the 3 pdb file names it says:

Number of residues read (pdb): 71
Aligned first residue at: 203
Aligned last residue at: 273

Then it continues to ask me to input pdb file name and will not continue to the next step (Shift the structure to origin?).
I was hoping for some advice on what I may be doing wrong.

Thank you,

Jaala

Check your file name

Posted: 2019.11.20 07:00
by AL
Does your file name contain special characters, spaces etc.?

Re: Pre-bunch Issue

Posted: 2019.11.23 01:09
by jaala
No special characters.

Jaala

Re: Pre-bunch Issue

Posted: 2019.12.03 12:57
by AL
jaala wrote:
2019.11.15 00:53
...Then it continues to ask me to input pdb file name and will not continue to the next step...
This means pre_bunch cannot find the pdb file. Are you are running pre_bunch from the command line in the folder with your pdb files?