I have some SAXS data that I am trying to analyse. However, I am not able to run Sreflex with DNA. The protein I am working with is a DNA repair enzyme so I was trying to understand the conformational change in the presence of DNA. When I run the program with protein and DNA or DNA alone I get "ERROR 148 Amount of residues (28) is different to amount of centroids (26), please check your input PDB file for non-standard residues or duplicated CA or C1' atoms."
I have tried to alter my PDB file in order to better model how the DNA should bind but I still run into the same error but with different residue and centroid values
I was just wondering if anyone could help me understand where I am going wrong.
Thanks
