CORAL crash when selecting .con file

Interactive modelling (MASSHA, SASpy) and global minimization programs (SASREF, BUNCH, CORAL, GLOBSYMM)
Post Reply
Message
Author
Groftehauge
Member
Posts: 6
Joined: 2014.07.28 16:21

CORAL crash when selecting .con file

#1 Post by Groftehauge » 2014.07.28 16:26

Ubuntu 12.04 Linux, ATSAS 2.5.2, CORAL Version 1.1 (r3706)

Whenever I get to the point where I input the .con file CORAL crashes. Any remedy?

At line 563 of file /home/atsas/svn/atsas-current-release-branch/atsas/coral/coral.for
Fortran runtime error: End of file
Attachments
input.con
(63 Bytes) Downloaded 314 times

Groftehauge
Member
Posts: 6
Joined: 2014.07.28 16:21

Re: CORAL crash when selecting .con file

#2 Post by Groftehauge » 2014.07.29 12:56

Okay, I'm an idiot. There was an empty CTER at the end of my input.con for no good reason.

aga
Member
Posts: 9
Joined: 2013.01.10 02:44

Re: CORAL crash when selecting .con file

#3 Post by aga » 2018.12.31 07:06

I have the same problem, the program just quits without warning or error message, or crashes.

I'm using it for the first time, so not sure where is the error in the con file, which is:

1-66A.pdb
LINK 10
77-133A.pdb
LINK 3
137-230A.pdb
CTER 15
1-133B.pdb
LINK 4
138-229B.pdb
CTER 16

I have 2 subunits which I want to keep fixed - only model the flexible loops and C-terminals.

Thanks

User avatar
AL
Administrator
Posts: 695
Joined: 2007.08.03 18:55
Location: EMBL Hamburg, Germany
Contact:

Try CORAL online

#4 Post by AL » 2019.01.04 12:29

aga wrote:
2018.12.31 07:06
I'm using it for the first time, so not sure where is the error in the con file...
Does CORAL online work for you?
*ATSAS online account required

User avatar
AL
Administrator
Posts: 695
Joined: 2007.08.03 18:55
Location: EMBL Hamburg, Germany
Contact:

Re: the program just quits without warning or error message

#5 Post by AL » 2019.02.26 14:35

aga wrote:
2018.12.31 07:06
the program just quits without warning or error message, or crashes.
We could not reproduce this. You should get an error message like "Domain 2: fixation is not compatible with initial configuration"; CORAL will exit with a non-zero exit code. Please make sure you use the latest ATSAS package.

asherat
Guest
Posts: 1
Joined: 2019.10.31 16:24

Re: CORAL crash when selecting .con file

#6 Post by asherat » 2019.10.31 16:30

When starting my CORAL run the windows closes in the independent actions:

- selecting more than 3 PDBs to keep their original position - just wanted to generate the missing residues
- selecting .con file that has more than 3 PDBs.

Windows ATSAS 2.8.4.
Thanks in advance for your help!

User avatar
AL
Administrator
Posts: 695
Joined: 2007.08.03 18:55
Location: EMBL Hamburg, Germany
Contact:

Try CORAL online

#7 Post by AL » 2019.11.11 20:11

asherat wrote:
2019.10.31 16:30
When starting my CORAL run the windows closes in the independent actions:
Does CORAL online work for you?
*ATSAS online account required

Post Reply