Interactive modelling (MASSHA, SASpy) and global minimization programs (SASREF, BUNCH, CORAL, GLOBSYMM)
-
jaala
- Guest
- Posts: 2
- Joined: 2019.11.15 00:46
#1
Post
by jaala » 2019.11.15 00:53
I'm trying to use pre-bunch with 3 domains and after I input the 3 pdb file names it says:
Number of residues read (pdb): 71
Aligned first residue at: 203
Aligned last residue at: 273
Then it continues to ask me to input pdb file name and will not continue to the next step (Shift the structure to origin?).
I was hoping for some advice on what I may be doing wrong.
Thank you,
Jaala
-
AL
- Administrator
- Posts: 695
- Joined: 2007.08.03 18:55
- Location: EMBL Hamburg, Germany
-
Contact:
#2
Post
by AL » 2019.11.20 07:00
Does your file name contain special characters, spaces etc.?
-
jaala
- Guest
- Posts: 2
- Joined: 2019.11.15 00:46
#3
Post
by jaala » 2019.11.23 01:09
No special characters.
Jaala
-
AL
- Administrator
- Posts: 695
- Joined: 2007.08.03 18:55
- Location: EMBL Hamburg, Germany
-
Contact:
#4
Post
by AL » 2019.12.03 12:57
jaala wrote: ↑2019.11.15 00:53
...Then it continues to ask me to input pdb file name and will not continue to the next step...
This means
pre_bunch cannot find the pdb file. Are you are running
pre_bunch from the command line in the folder with your pdb files?
